Once the pipeline is configured, you will need to import your desired files to the Input
using the the following steps:
In the PipelineView, right click on the Input folder under the Data folder, then
import (figure below). A pop-up menu appears which lets you select the files that
want to import.
Click on the small arrow next to the General folder to expand it, then select File
as the import source.
Click on the Next button
Next, as shown in figure below, click on the Browse button on the top of the window
choose the folder of your choice. The selected folder will be displayed on the left
the window, and the files inside the folder will be displayed on the right side.
Click the checkbox for the files that you want to run the pipeline on; currently the
CLAMP-Cancer pipeline can only process files with the .txt extension. Also, CLAMP-Cancer assists
in selecting your desired files in three different ways: Filter Types, Select All
Filter Types: Allows you to define the type of files that will be
imported. For example, you
may only want to import files with the .txt extension
Select All: Allows you to choose all displayed files Deselect All: Allow you to deselect the files that have already
Click on the Browse button next to the "Into folder" field to choose the folder that
want to import your files to. Here, we keep the default directory.
Click on the Finish button.
Now, you can double click on the Input folder to see the imported files
Similarly, you can also double click on each file to view its content (figure below).